As a by-product of our current effort to develop the maize model we assembled an up to date Arabidopsis model with additional reactions plus detailed GPRs and balanced reaction entries. The additional reactions mostly account for secondary metabolism such as carotenoid, phenylpropanoid and glucosinolate biosynthesis that play important role in plant defense system. The developed model for Arabidopsis, A. thaliana iRS1597, contains 1597 genes, 1798 reactions and 1820 metabolites. As many as 228 reactions and 72 metabolites are unique to A. thaliana iRS1597 model compared to the AraGEM model.

Related Publications:

Saha, R., Suthers, P.F. and C.D. Maranas (2011), "Zea mays, iRS1563: a comprehensive genome-scale metabolic model of maize metabolism, "PLoS ONE, 6(7): e21784.

The model is licensed under a Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Before downloading our model, we ask for your name and institution so we may better design future versions of our software. Every consideration has been made during the design, writing, and posting of this model to ensure it works properly.

The Costas Maranas Research group is not responsible if a model you download from this website does not work as expected.
Back to Models